Tables

Number

Extended Name

Short Name

Namespace

Requirement Level

Recommended

1

DNA-Spot/Trace Data core table

core

4dn_FOF-CT_core

required

not applicable

2

Spot Demultiplexing table

demultiplexing

4dn_FOF-CT_demultiplexing

optional

Yes

3

Trace Data table

trace

4dn_FOF-CT_trace

optional

not applicable

4

RNA Spot Data table

rna

4dn_FOF-CT_rna

optional

Yes (depending on experimental design)

5

Spot Quality table

quality

4dn_FOF-CT_quality

optional

Yes

6

RNA Spot Quality table

rna_quality

4dn_FOF-CT_rna_quality

optional

Yes (if rna present)

7

Spot Biological Data table

bio

4dn_FOF-CT_bio

optional

Yes

8

RNA Spot Biological Data table

rna_bio

4dn_FOF-CT_rna_bio

optional

Yes (if rna present)

9

Cell Data table

cell

4dn_FOF-CT_cell

optional

Yes (if segmentation performed)

10

Extra-Cell ROI Data table

extracell

4dn_FOF-CT_extracell

optional

Yes (if segmentation performed)

11

Sub-Cell ROI Data table

subcell

4dn_FOF-CT_subcell

optional

Yes (if segmentation performed)

12

Cell/ROI Mapping table

mapping

4dn_FOF-CT_mapping

conditionally required

not applicable