FISH Omics Format

FOF-CT: Chromatin Tracing

  • Background
  • Tables
  • Format description: overview
  • Downloadable Templates
  • DNA-Spot/Trace Data core table
  • Spot Demultiplexing table
  • Trace Data table
  • RNA Spot Data table
  • Spot Quality table
  • RNA Spot Quality table
  • Spot Biological Data table
  • RNA Spot Biological Data table
  • Cell Data table
  • Sub-Cell ROI Data table
  • Extra-Cell ROI Data table
  • Cell/ROI Mapping table
  • Example published datasets
    • 4DN Data Portal
    • Open Microscopy Environment Image Data Resource (OME-IDR)
  • Additional Information
  • Allowable value lists
  • Contributors
FISH Omics Format
  • Example published datasets
  • View page source

Example published datasets

Contents

  • Example published datasets

    • 4DN Data Portal

    • Open Microscopy Environment Image Data Resource (OME-IDR)

4DN Data Portal

A collection of Chromatin Tracing datasets presented in the 4DN standard FISH-Omics Format - Chromatin Tracing (FOF-CT) are available on the 4DN-Data Portal and were curated by the 4DN Data Coordination and Integration Center (DCIC) team

Open Microscopy Environment Image Data Resource (OME-IDR)

Multiplexed FISH results data sets presented in the 4DN FOF-CT format are also available on the OME-IDR

  • Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH

  • In situ genome sequencing of human PGP1 fibroblasts

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